The thing is, they still screwed Phoenix over just to set up Apollo's arc (and if you call that spoilers, it's widely advertised that Phoenix lost his job, so nyeh). Was it really so hard to just not associate Phoenix with the new arc at all so they could go on and live happily ever after? The game was still quite flawed in terms of way too many logic errors, but it would have been better if Phoenix were NOT still the main character.